RnoEX6038895 @ rn6
Exon Skipping
Gene
ENSRNOG00000026025 | Capn11
Description
calpain 11 [Source:RGD Symbol;Acc:1302946]
Coordinates
chr9:17741157-17741655:+
Coord C1 exon
chr9:17741157-17741240
Coord A exon
chr9:17741333-17741418
Coord C2 exon
chr9:17741581-17741655
Length
86 bp
Sequences
Splice sites
3' ss Seq
ATTCATGCCTCTCTCCCCAGGTT
3' ss Score
10.35
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
Exon sequences
Seq C1 exon
GCCACCAACAGTGACGATGTGGAAAAAATGGCCCATAATATGCTGGTGAAAGGTCACGCTTATGCAATCACCGGCCTACAAGAT
Seq A exon
GTTTACTACAGAGACAAGTTGGAAACCCTAATTCGAATCCAGAACCCCTGGGGCAGGATTGAGTGGAATGGAGCCTGGAGTGACAA
Seq C2 exon
AGCCAAGGAGTGGGAAGAGGTGATGCCGGAAGTTCAGATGCAGCTGCTGCACAAGAAGGAAGACGGGGAGTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026025-'6-10,'6-9,7-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(9.0=100)
A:
PF0064816=Peptidase_C2=FE(9.3=100)
C2:
PF0064816=Peptidase_C2=FE(8.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAACAGTGACGATGTGGAA
R:
ACTCCCCGTCTTCCTTCTTGT
Band lengths:
152-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]