GgaEX0015621 @ galGal3
Exon Skipping
Gene
ENSGALG00000010448 | LTBP1
Description
NA
Coordinates
chr3:32429333-32435497:-
Coord C1 exon
chr3:32435399-32435497
Coord A exon
chr3:32430565-32430690
Coord C2 exon
chr3:32429333-32429458
Length
126 bp
Sequences
Splice sites
3' ss Seq
GTTTTGTTTTGTTTGCTTAGAAA
3' ss Score
6.37
5' ss Seq
CTGGTATGA
5' ss Score
6.69
Exon sequences
Seq C1 exon
TAGTGATTGAGAAAACATCTCCGCCTCTGCCTGTTGAAGTTGCTCCTGAAGTCTCTACTTCGAGTGCAAGTCAAGTAATTGCACCTACTCAAGTTACAG
Seq A exon
AAATCAACGAGTGTACAGTTAATCCTGATATCTGTGGAGCAGGACACTGCGTTAATTTGCCTGTGGGATACACCTGCATCTGCTACGAGGGATACAGACTTAACGATCAGCAGACAAAATGCTCTG
Seq C2 exon
ATATTAATGAGTGTAATCAGACACCTCATCTCTGTTCCCTTGGACGCTGTGAAAATACTGAAGGAAGTTTCCTATGTATTTGCCAAGCTGGATTCATGGCCAGTGAAGATGGAACTGACTGCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010448-'14-26,'14-24,15-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.441 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAAACATCTCCGCCTCTGC
R:
AGTCAGTTCCATCTTCACTGGC
Band lengths:
210-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]