MmuEX6079393 @ mm10
Exon Skipping
Gene
ENSMUSG00000001870 | Ltbp1
Description
latent transforming growth factor beta binding protein 1 [Source:MGI Symbol;Acc:MGI:109151]
Coordinates
chr17:75282920-75291416:+
Coord C1 exon
chr17:75282920-75283018
Coord A exon
chr17:75290015-75290140
Coord C2 exon
chr17:75291291-75291416
Length
126 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTCCTTTTTTTTAAGAAA
3' ss Score
7.75
5' ss Seq
TCGGTAAGG
5' ss Score
10.48
Exon sequences
Seq C1 exon
TAGTGGTTGAAAAGACATCCCCTCCTGTGCCTGTGGAAGTAGCTCCTGAAGCTTCCACATCCAGTGCCAGCCAAGTGATTGCTCCTACGCAAGTAACAG
Seq A exon
AAATCAACGAATGTACTGTGAACCCGGACATTTGCGGAGCAGGACACTGCATCAACCTGCCGGTGCGGTATACCTGCATATGCTACGAGGGCTACAAGTTCAGTGAACAGCTGAGGAAATGTGTCG
Seq C2 exon
ACATTGATGAATGTGCTCAGGTCCGGCACCTCTGCTCCCAGGGTCGCTGTGAGAACACAGAGGGAAGTTTCCTGTGTGTCTGCCCGGCAGGGTTTATGGCCAGTGAGGAGGGTACTAACTGTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001870-'34-37,'34-35,36-37=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.627 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGTTGAAAAGACATCCCCT
R:
AGTTAGTACCCTCCTCACTGGC
Band lengths:
218-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types