GgaEX0015621 @ galGal4
Exon Skipping
Gene
ENSGALG00000010448 | LTBP1
Description
latent transforming growth factor beta binding protein 1 [Source:HGNC Symbol;Acc:HGNC:6714]
Coordinates
chr3:30541365-30568825:-
Coord C1 exon
chr3:30568754-30568825
Coord A exon
chr3:30542597-30542722
Coord C2 exon
chr3:30541365-30541490
Length
126 bp
Sequences
Splice sites
3' ss Seq
GTTTTGTTTTGTTTGCTTAGAAA
3' ss Score
6.37
5' ss Seq
CTGGTATGA
5' ss Score
6.69
Exon sequences
Seq C1 exon
CTTACCATGGATACAGTCCTATGACAGAATGCCCACAAGGCTACAAGAGGATCAATGCTACGTTTTGTCAAG
Seq A exon
AAATCAACGAGTGTACAGTTAATCCTGATATCTGTGGAGCAGGACACTGCGTTAATTTGCCTGTGGGATACACCTGCATCTGCTACGAGGGATACAGACTTAACGATCAGCAGACAAAATGCTCTG
Seq C2 exon
ATATTAATGAGTGTAATCAGACACCTCATCTCTGTTCCCTTGGACGCTGTGAAAATACTGAAGGAAGTTTCCTATGTATTTGCCAAGCTGGATTCATGGCCAGTGAAGATGGAACTGACTGCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010448_MULTIEX3-7/15=C1-8
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0068312=TB=PD(15.9=28.0),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTCCTATGACAGAATGCCC
R:
CAATGCAGTCAGTTCCATCTTCAC
Band lengths:
186-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]