GgaEX0015695 @ galGal3
Exon Skipping
Gene
ENSGALG00000010521 | COL25A1
Description
NA
Coordinates
chr4:38935199-38940472:+
Coord C1 exon
chr4:38935199-38935225
Coord A exon
chr4:38935934-38935987
Coord C2 exon
chr4:38940386-38940472
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTTGTCCCTTCTTTTTATAGGGT
3' ss Score
12.26
5' ss Seq
AAGGTGACC
5' ss Score
6.78
Exon sequences
Seq C1 exon
GGCAAAGATGGCAAGCCTGGCCTTGAT
Seq A exon
GGTTTCCCTGGTCCTCGAGGAGAAAAGGGTGAAATAGGAGAAAAGGGAGAAAAG
Seq C2 exon
GGGGAAAAGGGAAAGAAAGGCAAAAAGGGGCCTAAAGGGGAGAAAGGAGAACAGGGTGCTCCTGGATTAGATGCACCTTGCCCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010521-'33-35,'33-34,34-35
Average complexity
C2*
Mappability confidence:
88%=100=50%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=NA
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(10.0=100),PF0139113=Collagen=FE(11.8=100)
A:
PF0139113=Collagen=PD(11.2=50.0),PF0139113=Collagen=FE(25.0=100)
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAAGATGGCAAGCCTGG
R:
GCATCTAATCCAGGAGCACCC
Band lengths:
100-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]