GgaEX0015695 @ galGal4
Exon Skipping
Gene
ENSGALG00000010521 | COL25A1
Description
collagen, type XXV, alpha 1 [Source:HGNC Symbol;Acc:HGNC:18603]
Coordinates
chr4:37084994-37090434:+
Coord C1 exon
chr4:37084994-37085020
Coord A exon
chr4:37085728-37085781
Coord C2 exon
chr4:37090357-37090434
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTTGTCCCTTCTTTTTATAGGGT
3' ss Score
12.26
5' ss Seq
AAGGTGACC
5' ss Score
6.78
Exon sequences
Seq C1 exon
GGCAAAGATGGCGAGCCTGGCCTTGAT
Seq A exon
GGTTTCCCTGGTCCTCGAGGAGAAAAGGGTGAAATAGGAGAAAAGGGAGAAAAG
Seq C2 exon
GGATTCCGTGGAATTAAGGGGGAAAAAGGGGAGCCAGGCCAGCCTGGCCTGGATGGGCTGGATGCCCCTTGCCAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010521_MULTIEX1-3/5=2-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(9.3=100),PF0139113=Collagen=FE(11.1=100)
A:
PF0139113=Collagen=PD(3.5=16.7),PF0139113=Collagen=FE(23.6=100)
C2:
PF0139113=Collagen=FE(34.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAAGATGGCGAGCCTGG
R:
TGGCAAGGGGCATCCAGC
Band lengths:
100-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]