GgaEX0015753 @ galGal3
Exon Skipping
Gene
ENSGALG00000010566 | NPNT
Description
NA
Coordinates
chr4:39968079-39982697:-
Coord C1 exon
chr4:39982597-39982697
Coord A exon
chr4:39974748-39974798
Coord C2 exon
chr4:39968079-39968171
Length
51 bp
Sequences
Splice sites
3' ss Seq
TTTGGATATTTGTTTTACAGCTT
3' ss Score
7.25
5' ss Seq
AAGGTTAGC
5' ss Score
5.61
Exon sequences
Seq C1 exon
GTGGCCCAGACAAATAGTCTCCTCTGCAGGACTGTGCCGGTATGGAAGCAGAATTGATTGCTGCTGGGGCTGGGCCCGTTTGGCCTGGAGACAGTGCCAAC
Seq A exon
CTTTCTACGTCTTAAGGCAGAGAATAGCCAGCCTAAGGTGCCAGCCCAAAG
Seq C2 exon
CTATATGCCAACCAGGATGCAAACACGGTGAATGCATTGGGCCAAACAAGTGCAAGTGCCACCCAGGATACACTGGAAAAACGTGCAATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010566_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF126612=hEGF=WD(100=40.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCTCCTCTGCAGGACTGTG
R:
GTTTGGCCCAATGCATTCACC
Band lengths:
133-184
Functional annotations
There are 0 annotated functions for this event