GgaEX0015753 @ galGal4
Exon Skipping
Gene
ENSGALG00000010566 | NPNT
Description
nephronectin [Source:HGNC Symbol;Acc:HGNC:27405]
Coordinates
chr4:38028136-38042209:-
Coord C1 exon
chr4:38042109-38042209
Coord A exon
chr4:38034805-38034855
Coord C2 exon
chr4:38028136-38028228
Length
51 bp
Sequences
Splice sites
3' ss Seq
TTTGGATATTTGTTTTACAGCTT
3' ss Score
7.25
5' ss Seq
AAGGTTAGC
5' ss Score
5.61
Exon sequences
Seq C1 exon
GTGGCCCAGACAAATAGTCTCCTCTGCAGGACTGTGCCGGTATGGAAGCAGAATTGATTGCTGCTGGGGCTGGGCCCGTTTGGCCTGGAGACAGTGCCAAC
Seq A exon
CTTTCTACGTCTTAAGGCAGAGAATAGCCAGCCTAAGGTGCCAGCCCAAAG
Seq C2 exon
CTATATGCCAACCAGGATGCAAACACGGTGAATGCATTGGGCCAAACAAGTGCAAGTGCCACCCAGGATACACTGGAAAAACGTGCAATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010566_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.152
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCTCCTCTGCAGGACTGTG
R:
GTTTGGCCCAATGCATTCACC
Band lengths:
133-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]