MmuEX0032198 @ mm9
Exon Skipping
Gene
ENSMUSG00000040998 | Npnt
Description
nephronectin [Source:MGI Symbol;Acc:MGI:2148811]
Coordinates
chr3:132580425-132611111:-
Coord C1 exon
chr3:132611011-132611111
Coord A exon
chr3:132594546-132594596
Coord C2 exon
chr3:132580425-132580517
Length
51 bp
Sequences
Splice sites
3' ss Seq
TTTGGCCATTTGTTTTGCAGCTT
3' ss Score
9.85
5' ss Seq
AAGGTTAGA
5' ss Score
6.12
Exon sequences
Seq C1 exon
GTGGCCCAGGCAAATAGTTTCTTCAATCGGCCTATGTCGCTATGGAGGCAGGATTGACTGCTGCTGGGGCTGGGCCCGCCAGTCCTGGGGACAGTGCCAAC
Seq A exon
CTTTCTACGTCTTAAGGCAGAGACTAGCAAGGATAAGGTGCCAGCTCAAAG
Seq C2 exon
CTGTGTGTCAACCACAGTGCAAACACGGAGAGTGCGTCGGGCCAAACAAGTGCAAATGTCACCCTGGATTTGCTGGGAAAACCTGCAACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040998_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0236314=C_tripleX=PU(22.2=11.4)
A:
NO
C2:
PF0236314=C_tripleX=PD(72.2=40.6),PF0764510=EGF_CA=PU(0.1=0.0)
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCTATGGAGGCAGGATTGA
R:
TTTCCCAGCAAATCCAGGGTG
Band lengths:
145-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types