RnoEX0060723 @ rn6
Exon Skipping
Gene
ENSRNOG00000052873 | Npnt
Description
nephronectin [Source:MGI Symbol;Acc:MGI:2148811]
Coordinates
chr2:238038135-238066835:-
Coord C1 exon
chr2:238066731-238066835
Coord A exon
chr2:238050453-238050503
Coord C2 exon
chr2:238038135-238038227
Length
51 bp
Sequences
Splice sites
3' ss Seq
TTTGGCCATTTGTTTTGCAGCTT
3' ss Score
9.85
5' ss Seq
AAGGTTAGA
5' ss Score
6.12
Exon sequences
Seq C1 exon
ATAGGTGGCCCAGGCAAATAGTATCTTCCATTGGCCTATGTCGCTATGGTGGCAGGATTGACTGCTGCTGGGGCTGGGCTCGCCAGTCCTGGGGACAGTGTCAAC
Seq A exon
CTTTCTACGTCTTAAGGCAGAGACTAGCAAGGATAAGGTGCCAGCTCAAAG
Seq C2 exon
CTGTGTGCCAACCACAGTGCAAACACGGAGAGTGCGTCGGGCCAAACAAGTGCAAATGTCACCCTGGATTTGCTGGGAAAACCTGCAACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052873_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0764510=EGF_CA=PU(0.1=0.0)
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGGCCCAGGCAAATAGTA
R:
ACTCTCCGTGTTTGCACTGTG
Band lengths:
136-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]