GgaEX0016411 @ galGal4
Exon Skipping
Gene
ENSGALG00000010956 | TTC21B
Description
tetratricopeptide repeat domain 21B [Source:HGNC Symbol;Acc:HGNC:25660]
Coordinates
chr7:19160427-19161846:+
Coord C1 exon
chr7:19160427-19160511
Coord A exon
chr7:19160932-19161030
Coord C2 exon
chr7:19161654-19161846
Length
99 bp
Sequences
Splice sites
3' ss Seq
ATAATTGATTTTTCTTTAAGGCT
3' ss Score
6.04
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
ACTATTGCAGAAAGATGCTCTCAATTTAGAGGCCACAAGAATGGAGGCCCTGCATTTTCTGTGCAGAGAAGGAAAGATGCGTGAG
Seq A exon
GCTTCGGCAAGACTAAGTGACCTCATTAAAGCATTGGACAGGTTGGAGCCGCGTAATTCACAGCTCTTCTATAAAATGGCTTTAGCTTTCAGTAGAACA
Seq C2 exon
TGTGGCCGGAACCAACTCATCCTTCAACATACACAAACATTAGTTGAAAGAGCATTTAATTTGGATTCTGACAATGCAGAATTTGCTACGGAGCTTGGCTACCAAATGATTTTACAAGGGAAAGTGAAAGAAGCTTTAAAATGGTATCAGACTGCTATGACACTTGATGAGACAAGCGTTTCTGCCCTAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010956_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF145591=TPR_19=PU(50.0=44.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGCCACAAGAATGGAGGC
R:
TCATTTGGTAGCCAAGCTCCG
Band lengths:
167-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]