DreEX0081912 @ danRer10
Exon Skipping
Gene
ENSDARG00000012368 | ttc21b
Description
tetratricopeptide repeat domain 21B [Source:ZFIN;Acc:ZDB-GENE-031010-34]
Coordinates
chr9:50149958-50153030:-
Coord C1 exon
chr9:50152946-50153030
Coord A exon
chr9:50150371-50150469
Coord C2 exon
chr9:50149958-50150150
Length
99 bp
Sequences
Splice sites
3' ss Seq
ATTTATTTCTCTGGTTACAGTCT
3' ss Score
5.95
5' ss Seq
GTGGTAATA
5' ss Score
3.78
Exon sequences
Seq C1 exon
GCTTCTCCAGCGGGAGAAAAATAACCTGGAGGCTCTGAGGATGCAGGCCCTGCACGCTCTCTGCCGGGATGGAGACATCGCTGAG
Seq A exon
TCTGTAAATCAGCTATCAAATCTGATAAGCAATCTGGACATTCAAGAACCGAGCAATCCGGAGCTCTTCTACAGGATGTCTTTGGCGTTCACTCGAGTG
Seq C2 exon
TGTGGAAGAGCTGAGAAGATTCTCCAGCACACTCACCGGATGGTGGAGCGGGCATTTGCACAGGCTTCCAGTGACTCTGAACTAGCCACAGAGATGGGCTACCAGCTGATCCTCATGGGCAGAGTCAAAGAGGCCATGAAGTGGTACAAAACAGCAATGACTCTTGATGAAAGCAGCGTCTCCGCTTTGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012368-'7-8,'7-7,8-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF145591=TPR_19=PU(38.2=44.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCTGGAGGCTCTGAGGATG
R:
TCAGCTGGTAGCCCATCTCTG
Band lengths:
172-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]