MmuEX6101724 @ mm9
Exon Skipping
Gene
ENSMUSG00000034848 | Ttc21b
Description
tetratricopeptide repeat domain 21B [Source:MGI Symbol;Acc:MGI:1920918]
Coordinates
chr2:66074278-66077664:-
Coord C1 exon
chr2:66077580-66077664
Coord A exon
chr2:66075844-66075942
Coord C2 exon
chr2:66074278-66074470
Length
99 bp
Sequences
Splice sites
3' ss Seq
TACTGTTTATTTTGTCTTAGGCT
3' ss Score
7.73
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
Exon sequences
Seq C1 exon
GCTGCTGCTTCAAGACAATCACAACGTGGAGGCGCTGAGGATGCTGGCTCTGTATTATCTGTGTAGGGAAGGGGACGTAGAGAAG
Seq A exon
GCTGCTACCAAGCTGGAAAATTTAGGAAATGCATTGGATGTCATGGAACCACAGAATGCTCAACTTTTTTATAAGATTACACTAGCCTTCAGCAGAACG
Seq C2 exon
TGTGGACGTAATCAACTCATTCTCCAGAAAGTTCAAAGTTTCCTAGAAAAAGCATTTAGTTTAACTCCCCAGCAAGCAGAAATTGCTACAGAGCTCGGCTACCAAATGATTCTCCAAGGCAAGGTCAAGGAGGCCTGGAAGTGGTACAGGACCGCCATGACGCTGAATGAGAGCAACATCTCTGCTGTCACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034848-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134141=TPR_11=PU(63.1=63.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGTGTAGGGAAGGGGACG
R:
TACCACTTCCAGGCCTCCTTG
Band lengths:
175-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: