HsaEX6016381 @ hg38
Exon Skipping
Gene
ENSG00000123607 | TTC21B
Description
tetratricopeptide repeat domain 21B [Source:HGNC Symbol;Acc:HGNC:25660]
Coordinates
chr2:165930172-165933057:-
Coord C1 exon
chr2:165932973-165933057
Coord A exon
chr2:165931758-165931856
Coord C2 exon
chr2:165930172-165930364
Length
99 bp
Sequences
Splice sites
3' ss Seq
ACCAGTTCCTTTTGTTTTAGGCT
3' ss Score
8.87
5' ss Seq
ACTGTGAGA
5' ss Score
2.78
Exon sequences
Seq C1 exon
GTTGCTGCTCCAAGATAGCCAAAATGTGGAAGCACTGAGAATGCAGGCACTCTACTATGTGTGTAGAGAGGGGGATATAGAGAAG
Seq A exon
GCTTCCACCAAGCTGGAAAACTTGGGAAATACATTGGATGCCATGGAACCACAGAATGCTCAACTTTTCTATAACATTACACTCGCCTTCAGCAGAACT
Seq C2 exon
TGTGGACGTAGTCAACTTATTCTTCAAAAAATTCAAACGTTACTTGAGAGAGCTTTTAGTTTAAACCCTCAGCAATCAGAATTTGCTACAGAACTTGGATACCAAATGATTTTACAAGGAAGAGTTAAAGAGGCACTGAAGTGGTATAAGACCGCCATGACACTTGATGAGACTAGTGTGTCTGCCCTAGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123607-'17-13,'17-12,18-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.030 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF145591=TPR_19=PU(50.9=44.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGCTGCTCCAAGATAGCCA
R:
AGCAAATTCTGATTGCTGAGGGT
Band lengths:
172-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains