RnoEX6038274 @ rn6
Exon Skipping
Gene
ENSRNOG00000034089 | Ttc21a
Description
tetratricopeptide repeat domain 21A [Source:RGD Symbol;Acc:1308806]
Coordinates
chr8:128631597-128634850:+
Coord C1 exon
chr8:128631597-128631681
Coord A exon
chr8:128633831-128633929
Coord C2 exon
chr8:128634658-128634850
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTGCCTGTTGTCCCCCGCAGGCT
3' ss Score
11.9
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
AATCCTTGAAAAAGACGAGAACAATATCGATGCCTGGCAAATCCTAGCGGTGCATGAGCTCGTGAAAGAAGGAAACACAGACAGA
Seq A exon
GCTGCCGACCGTGTCAGAAACCTAATCAAGGCGCTAGAGACTGGAGAGCCCCAAAATCCAAACCTACATCTTAAGAAGATCCTTGCAGTCAGCAGGCTG
Seq C2 exon
TGTGGGAGGCACCAGGTGGTCCATCGGCTTGTGAGCGGCTTCCTGGAGCGCACCTTCATGGCCACACCTTCCTGTGCCCTTGTGGCCACAGAGCTGGGCTACCTCTTCATCCTACAGCAACAAGTGAAGGAAGCCTCTCTGTGGTACAAGGAGGCCATGAAGCTGGAGGAGAACAGGCTGGCTGCCTTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034089-'10-8,'10-7,11-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCATGAGCTCGTGAAAGA
R:
ACCACAGAGAGGCTTCCTTCA
Band lengths:
182-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]