DreEX0009132 @ danRer10
Exon Skipping
Gene
ENSDARG00000102541 | TTC21A
Description
tetratricopeptide repeat domain 21A [Source:HGNC Symbol;Acc:HGNC:30761]
Coordinates
chr24:41150810-41152728:-
Coord C1 exon
chr24:41152644-41152728
Coord A exon
chr24:41151505-41151603
Coord C2 exon
chr24:41150810-41151022
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTTTGTGTTGTGCATTTGAGGTA
3' ss Score
4.5
5' ss Seq
CTGGTCTGA
5' ss Score
0.16
Exon sequences
Seq C1 exon
AGTTCTGGAGCGTGATGCACAGGATCTGAAAGCTCTTCAGATGTTGACCGTCATCGCTGTAGTTAAAGATGGAGATACAGAGCTG
Seq A exon
GTAAAGCAGCGTCTGCAGGCTTTAGTGAGTGCACTGGAGCTCCGTGAACCCTGCAACCCCAGCTTGCATGTGGAGATCACTGCTGTCATCAGCCGACTG
Seq C2 exon
ATTCGAGATCAGTTCCAGTTTAACCTGATTAAAGCTCAAGCTCTGCTGAGGTCTGGAGATGTGAAGAGCGCCATCCAGTGTCTGAACCTCATCATGAAGATGCCGGGATTCCAGGGGCCCTCAGAGGGGCCGCAGTCCTCCATCATCTCCAGCAGTGAGCGATTGTGTGTGTTTCTGCAGCTCAGCGAAGCTCTCAGGCTCAATGGAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102541_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.047
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000160880fB803
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTGATGCACAGGATCTGAA
R:
TGAGGTTCAGACACTGGATGG
Band lengths:
167-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]