HsaEX0067822 @ hg19
Exon Skipping
Gene
ENSG00000168026 | TTC21A
Description
tetratricopeptide repeat domain 21A [Source:HGNC Symbol;Acc:30761]
Coordinates
chr3:39159560-39162680:+
Coord C1 exon
chr3:39159560-39159644
Coord A exon
chr3:39161413-39161511
Coord C2 exon
chr3:39162488-39162680
Length
99 bp
Sequences
Splice sites
3' ss Seq
TCTCTGTTTTGTCCCTGCAGGCT
3' ss Score
12.75
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
AATCCTAGAAAAAGATGAGAGCAATATTGATGCCTGCCAAATTCTAACCGTGCATGAGCTTGCAAGAGAAGGAAACATGACCACA
Seq A exon
GCTACCAATCACGTTAGAAATCTGATTAAGGCACTAGAGACAAGGGAACCCGAAAATCCAAGCCTCCATCTTAAAAAAATTATTGTGGTTAGCCGACTG
Seq C2 exon
TGTGGGAGTCACCAGGTGATTCTAGGGCTAGTGTGTAGTTTCATCGAGCGCACCTTCATGGCCACCCCCTCGTATGTCCATGTGGCCACAGAACTGGGCTATCTCTTCATCCTGAAGAACCAAGTGAAAGAGGCCTTGCTGTGGTATTCAGAAGCCATGAAACTGGACAAGGATGGCATGGCTGGTTTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168026_MULTIEX3-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.072 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134141=TPR_11=PU(58.0=61.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTAACCGTGCATGAGCTTGC
R:
GCAAGGCCTCTTTCACTTGGT
Band lengths:
182-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)