MmuEX6069872 @ mm9
Exon Skipping
Gene
ENSMUSG00000032514 | Ttc21a
Description
tetratricopeptide repeat domain 21A [Source:MGI Symbol;Acc:MGI:1921302]
Coordinates
chr9:119854063-119855929:+
Coord C1 exon
chr9:119854063-119854147
Coord A exon
chr9:119854601-119854699
Coord C2 exon
chr9:119855737-119855929
Length
99 bp
Sequences
Splice sites
3' ss Seq
ATTGCCTGTTGTCCCCGCAGGCT
3' ss Score
12.3
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
AATCCTTGAAAAAGACGAAAACAATATTGATGCCTGGCAAATTCTAGCTGTGCACGAGCTGGTGAAAGAAGGGAACACGGACAGA
Seq A exon
GCTGCCGACCGGGTCAGAAACCTCATCAAGGCGCTAGAGACTGGAGAGCCCCACAATCCAAACCTACATCTTAAGAAGATCCTTGTAATCAGCAGGCTG
Seq C2 exon
TGTGGGAGGCACCAGGTGGTCCATCGGCTTGTGAGCGGCTTCCTGGAGCGCATCTTTATGGCCACACCTTCCTGTGCCCTTGTGGCCACAGAGCTGGGCTACCTCTTCATCCTACACCAACAAGTGAAGGAAGCCTGTCTGTGGTACAAGGAGGCCATGAAGCTGGAGGAGAACAGGCTGGCTGCCTTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032514-'7-7,'7-6,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134141=TPR_11=PU(64.1=63.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCACGAGCTGGTGAAAGAAG
R:
CCACAGACAGGCTTCCTTCAC
Band lengths:
179-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: