GgaEX0016760 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NEA4]
Coordinates
chr7:21468483-21471139:-
Coord C1 exon
chr7:21471039-21471139
Coord A exon
chr7:21468888-21468954
Coord C2 exon
chr7:21468483-21468575
Length
67 bp
Sequences
Splice sites
3' ss Seq
TATTTGTTCTTGACTGTCAGGGA
3' ss Score
6.45
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTGAATCGTTTTGAGCAGTTTAACATTAACTATGCAAATGAGAAGCTCCAGGAATATTTCAACAAGCATATCTTCTCCTTGGAGCAGCTGGAGTACAACAG
Seq A exon
GGAAGGGATAAATTGGGAAGCTATTGACTGGATGGATAATGCGGAGTGCCTGGACCTTATTGAGAAG
Seq C2 exon
AAACTGGGTCTACTGGCTTTGGTGAATGAAGAGAGTCGATTCCCCAAAGGCACAGACAACACCCTTCTGGAAAAACTTCACAGCCAGCATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011172_CASSETTE8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.0=100)
A:
PF0006316=Myosin_head=FE(3.3=100)
C2:
PF0006316=Myosin_head=FE(4.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAATCGTTTTGAGCAGTTTAACA
R:
GAAGGGTGTTGTCTGTGCCTT
Band lengths:
168-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]