GgaEX0016766 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr7:23564299-23565979:-
Coord C1 exon
chr7:23565966-23565979
Coord A exon
chr7:23565277-23565361
Coord C2 exon
chr7:23564299-23564402
Length
85 bp
Sequences
Splice sites
3' ss Seq
GCCTGTGTTCTTTGTTTCAGAAC
3' ss Score
11.99
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
ATTTACTGGAAAAG
Seq A exon
AACAGAGTGGTACACCAGAACCCTGGAGAGAGGAATTACCACATCTTCTATGCTCTGCTGGCTGGTGTGAGCGGGGAGCTGAAAG
Seq C2 exon
AGAGCCTCTCCCTCGCTGAGCCGGAGACTTACCGGTACTTGAGCCAGTCCGGCTGTGTGAGCGATGAGAACCTGAATGATGGAGAAATGTTCACTAAGGTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011172-'6-9,'6-8,8-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(0.8=100)
A:
PF0006316=Myosin_head=FE(5.7=100)
C2:
PF0006316=Myosin_head=FE(6.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]