GgaEX0017829 @ galGal3
Exon Skipping
Gene
ENSGALG00000011858 | KCNH5
Description
NA
Coordinates
chr5:56040859-56060731:+
Coord C1 exon
chr5:56040859-56040931
Coord A exon
chr5:56053395-56053518
Coord C2 exon
chr5:56060625-56060731
Length
124 bp
Sequences
Splice sites
3' ss Seq
TCTTCTCTTTCTTCTTTTAGAAT
3' ss Score
12.21
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
ATGCCGGGGGGCAAGAGAGGGCTGGTGGCACCGCAGAACACCTTCCTGGAGAACATCGTCCGGCGCTCCAGCG
Seq A exon
AATCCAGTTTTTTGTTGGGAAACGCCCAGATTGTGGACTGGCCTGTAGTTTATAGTAATGACGGATTTTGTAAACTCTCTGGATATCATCGCGCCGACGTCATGCAGAAAAGTAGCACTTGCAG
Seq C2 exon
TTTTATGTATGGTGAACTGACAGACAAGAAGACCATTGAAAAAGTCAGACAGACTTTCGACAACTATGAGTCAAACTGCTTCGAAATTCTCCTCTACAAGAAAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011858-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.080 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134261=PAS_9=PU(0.9=4.0)
A:
PF134261=PAS_9=FE(37.3=100)
C2:
PF134261=PAS_9=FE(32.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGGCAAGAGAGGGCTG
R:
TTTCTTGTAGAGGAGAATTTCGAAGC
Band lengths:
170-294
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]