RnoEX0046039 @ rn6
Exon Skipping
Gene
ENSRNOG00000009542 | Kcnh5
Description
potassium voltage-gated channel subfamily H member 5 [Source:RGD Symbol;Acc:621417]
Coordinates
chr6:98119706-98146057:-
Coord C1 exon
chr6:98145957-98146057
Coord A exon
chr6:98135469-98135592
Coord C2 exon
chr6:98119706-98119812
Length
124 bp
Sequences
Splice sites
3' ss Seq
ATTCTCTCTTTCTTCTTTAGAAT
3' ss Score
11.44
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
TCAACATGCACACCTGTGGGTGCACAACTTCACACACAAATACCAACTTAACTGCTGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGG
Seq A exon
AATCAAGTTTCTTACTGGGAAATGCCCAAATTGTGGACTGGCCTGTAGTTTATAGTAATGACGGATTTTGTAAACTCTCTGGATATCATCGAGCTGACGTCATGCAGAAAAGCAGCACTTGCAG
Seq C2 exon
TTTTATGTATGGAGAACTGACCGATAAGAAGACCATTGAGAAAGTCAGGCAGACTTTTGACAACTACGAGTCAAACTGTTTTGAAGTTCTTCTGTATAAAAAAAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009542-'1-1,'1-0,2-1
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF134261=PAS_9=FE(37.3=100)
C2:
PF134261=PAS_9=FE(32.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCAACATGCACACCTGTGGG
R:
ACAGTTTGACTCGTAGTTGTCA
Band lengths:
180-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]