DreEX6062708 @ danRer10
Exon Skipping
Gene
ENSDARG00000069117 | kcnh5b
Description
potassium voltage-gated channel, subfamily H (eag-related), member 5b [Source:ZFIN;Acc:ZDB-GENE-090319-1]
Coordinates
chr13:37249786-37258422:-
Coord C1 exon
chr13:37257663-37258422
Coord A exon
chr13:37254878-37255001
Coord C2 exon
chr13:37249786-37249892
Length
124 bp
Sequences
Splice sites
3' ss Seq
TCTTTTCTCTAAACCTTCAGAGA
3' ss Score
7.95
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
TTTAAAATGCCATTTATCATAGCAAAGCATAGAAACGCCTTTGAACTGACATTTAATTCCTCCACAACGTGAATATTTGATATCTAATTCAGAAATGTCGAGTATGTGATGCTCAAGGCTAACAGATAACCTGTGTTTTTTTCCTGTGCGGCGGGGTTGTTGTTATCCACTGTTGCTTACTTCGCGCGCGCTCAGTTGGAGATCCCCAGCTCCTGTCAACGCGCCTCTCTGCAGCTGCGCATGCGCCAGGAGCTCCCCGTGCCCACAGACTTGTCGCTTTGAGCCTAGAGCGTGCGCGGGTGGCACACAGAAGCTCCCGGGCAGCCAGATCGCGACGTTACCATGAGCCTCCCCGTTCCACCGGCTGAGACTCCACGCGCAGAGAGTGCCCACCTGACGAGAGCAGCGCGACACCCACAGCCGCACGATGCCCGGGGGAAAGAGAGGGCTGGTGGCACCGCAAAACACTTTCCTGGAGAATATCGTTAGGCGCTCGAGTG
Seq A exon
AGACAAGTTTCTTGCTGGGAAACGCTCAGATTGTGGACTGGCCTGTAGTTTACAGTAATGACGGCTTCTGCAAGCTGTCTGGATACCACAGAGCAGAGGTCATGCAGAAGAGCAGCACATGCAG
Seq C2 exon
TTTTATGTATGGGGAGCTGACAGACAAGAAGACCATAGACAAGGTGCGACAGGCCTTTGACAACTATGAGTCCAACTGCTTTGAAGTTCTGCTGTACAGAAAGAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069117-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.080 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134261=PAS_9=PU(0.1=0.0)
A:
PF134261=PAS_9=PU(37.6=97.6)
C2:
PF134261=PAS_9=FE(33.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGATCGCGACGTTACCATG
R:
TAGTTGTCAAAGGCCTGTCGC
Band lengths:
242-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]