BtaEX6054411 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011379 | KCNH5
Description
Bos taurus potassium voltage-gated channel, subfamily H (eag-related), member 5 (KCNH5), mRNA. [Source:RefSeq mRNA;Acc:NM_001192989]
Coordinates
chr10:75592422-75637242:-
Coord C1 exon
chr10:75637170-75637242
Coord A exon
chr10:75605350-75605473
Coord C2 exon
chr10:75592422-75592528
Length
124 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTTTTCTTCTTTAGAAT
3' ss Score
12.33
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
ATGCCGGGGGGCAAGAGAGGGCTGGTGGCACCGCAGAACACGTTTCTGGAAAACATCGTCAGGCGCTCCAGTG
Seq A exon
AATCGAGTTTCTTACTGGGAAATGCCCAGATTGTGGATTGGCCTGTAGTTTATAGTAATGACGGTTTTTGCAAACTCTCTGGGTATCATCGAGCTGACGTCATGCAGAAGAGTAGCACTTGCAG
Seq C2 exon
TTTTATGTATGGAGAATTGACTGACAAAAAAACCATTGAGAAAGTCAGGCAGACTTTTGACAACTACGAGTCAAACTGCTTTGAAGTTCTCTTGTACAAGAAAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011379-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.060 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134261=PAS_9=PU(0.9=4.0)
A:
PF134261=PAS_9=FE(37.3=100)
C2:
PF134261=PAS_9=FE(32.7=100)

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGGCAAGAGAGGGCTG
R:
TTTCTTGTACAAGAGAACTTCAAAGC
Band lengths:
170-294
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]