GgaEX0018150 @ galGal3
Exon Skipping
Gene
ENSGALG00000012068 | C4orf21
Description
NA
Coordinates
chr4:58683166-58685336:+
Coord C1 exon
chr4:58683166-58683243
Coord A exon
chr4:58684081-58684228
Coord C2 exon
chr4:58685209-58685336
Length
148 bp
Sequences
Splice sites
3' ss Seq
AATGTTATGAAATCTTTAAGCTT
3' ss Score
3.34
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
TCTACTTGATCTTGGATTTGAGGATTTTATCAGAGTGGGAAGTATTAGGAAAATCACCAAAGCAATTCTTCCCTATAG
Seq A exon
CTTACATGCTGGCTCAGGAAATGAAAATGAACAGTTAAAAGAACTTCTTGCTCTCATGAAAGAAGATTTAGCTCCAGCTGAAAAAATGTATGTAAGGAAGAGTATTGAGCGGCATAAACTGGGGACCAATAAAACTGCATTGCAACAG
Seq C2 exon
GTAAAAGTGGTTGGAGTGACCTGCGCTGCCTGCCCGTTCCCTTGCTTGGATACTCTTAAGTTTCCTGTAGTGGTGCTGGATGAGTGCAGTCAGATGACTGAACCTACTTCTCTCCTTCCTATTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012068-'11-14,'11-13,12-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF130861=AAA_11=FE(11.2=100)
A:
PF130861=AAA_11=FE(21.1=100)
C2:
PF130861=AAA_11=FE(18.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTACTTGATCTTGGATTTGAGGA
R:
TGCAATAGGAAGGAGAGAAGTAGGT
Band lengths:
204-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]