RnoEX0101901 @ rn6
Exon Skipping
Gene
ENSRNOG00000036980 | Zgrf1
Description
zinc finger, GRF-type containing 1 [Source:RGD Symbol;Acc:1305834]
Coordinates
chr2:231932149-231938624:+
Coord C1 exon
chr2:231932149-231932226
Coord A exon
chr2:231932621-231932768
Coord C2 exon
chr2:231938497-231938624
Length
148 bp
Sequences
Splice sites
3' ss Seq
TTCTTGTTGCTCAATTTCAGCTT
3' ss Score
8.35
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GCTTCTCAGTCTTGGATTTGAAAAGTTCATCCGAGTCGGGAGTGTTAGGAAGATTGCCAAGCCAGTTTTACCTTACAG
Seq A exon
CTTACATGCTAGCTCAGACAATGAAAGCGAACAATTAAAGGAACTCCACGCACTGATGAGGGAAGAACTGACTCCAATAGAAAGAGTTTATGTCAGGAAAAGTATTGAGCAGCATAAACTGGGGACCAACAGAGTCCTGCTAAAGCAG
Seq C2 exon
GCTCGCGTTGTTGGCATCACCTGTGCGGCCTGCCCATTCCCGTGTATGAATGACCTTAAGTTCCCTGTGGTTGTGCTGGATGAGTGCAGTCAAATGACAGAGCCAGCCTCACTCCTTCCTATCGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000036980-'32-25,'32-24,33-25
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF130861=AAA_11=FE(11.1=100)
A:
PF130861=AAA_11=FE(20.9=100)
C2:
PF130861=AAA_11=FE(17.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCTCAGTCTTGGATTTGAAA
R:
GCGATAGGAAGGAGTGAGGCT
Band lengths:
203-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]