HsaEX6085864 @ hg38
Exon Skipping
Gene
ENSG00000138658 | ZGRF1
Description
zinc finger GRF-type containing 1 [Source:HGNC Symbol;Acc:HGNC:25654]
Coordinates
chr4:112547285-112554782:-
Coord C1 exon
chr4:112554705-112554782
Coord A exon
chr4:112553835-112553982
Coord C2 exon
chr4:112547285-112547408
Length
148 bp
Sequences
Splice sites
3' ss Seq
GTTTTAATATAATTCTTTAGCTT
3' ss Score
6.15
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GCTTCTCAGTCTTGGATTTGAAAACTTTATCAGAGTTGGGAGTGTTAGGAAGATTGCCAAACCAATTTTACCTTATAG
Seq A exon
CTTGCATGCTGGCTCAGAAAATGAAAGTGAACAGTTAAAAGAACTACATGCACTAATGAAAGAAGACCTGACTCCTACGGAAAGAGTCTATGTGAGAAAAAGCATTGAGCAGCATAAACTGGGGACCAATAGAACCCTGCTGAAGCAG
Seq C2 exon
GTTTGAGTGTGAAAAGCTGATTCTTGTTGGGGATCCCAAACAGCTACCTCCTACTATTCAGGGTTCTGATGCAGCTCATGAAAATGGATTGGAACAAACTCTTTTTGATCGACTTTGCTTAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138658_MULTIEX1-3/6=2-6
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.008 C2=0.141
Domain overlap (PFAM):
C1:
PF130861=AAA_11=FE(11.1=100)
A:
PF130861=AAA_11=FE(20.9=100)
C2:
PF130861=AAA_11=PD(9.4=52.4),PF130871=AAA_12=PU(5.9=26.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCTCAGTCTTGGATTTGAAA
R:
CATTAAGCAAAGTCGATCAAAAAGAG
Band lengths:
202-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains