GgaEX0018896 @ galGal3
Exon Skipping
Gene
ENSGALG00000012495 | Q9DEH4_CHICK
Description
NA
Coordinates
chr7:36823730-36825357:-
Coord C1 exon
chr7:36825253-36825357
Coord A exon
chr7:36824299-36824409
Coord C2 exon
chr7:36823730-36823840
Length
111 bp
Sequences
Splice sites
3' ss Seq
TTTCTCCTTATTCTCATTAGAAA
3' ss Score
7.14
5' ss Seq
GAGGTAGCA
5' ss Score
4.75
Exon sequences
Seq C1 exon
GTGAAATACAAGGAAAAGTATGAGAAGGAAAAAGGCAAACCTATGCTGGACTTTGAAACTCCAACATACCTAACTGCAAAGGAATCTCAGCTCATGCAGAGTGAG
Seq A exon
AAAGAATATAAGAGGGACTTTGAAGAGTCCATTAAGGGCAGAAACCTTACTGGCTTGGAGATAACACCATCCTTATTACATGTCAAATATGCAACCAAAATAGCAAGCGAG
Seq C2 exon
AAAGAATACAGGAAGGATCTGGAGGAGGGTGTCAAAGGTAAAGGACTATCTGTTTTGGAGGAGACTCCAGACATGTTAAGAGCAAAGAATGCAACTCAGATCCTGAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012495_CASSETTE3
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.135 C2=0.297
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
A:
PF0088013=Nebulin=PD(37.9=29.7),PF0088013=Nebulin=PU(55.2=43.2)
C2:
PF0088013=Nebulin=PD(37.9=29.7),PF0088013=Nebulin=PU(55.2=43.2)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAAAGTATGAGAAGGAAAAAGGCA
R:
CTCATTCAGGATCTGAGTTGCA
Band lengths:
205-316
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]