RnoEX0058998 @ rn6
Exon Skipping
Gene
ENSRNOG00000006783 | Neb
Description
nebulin [Source:RGD Symbol;Acc:1311134]
Coordinates
chr3:37682361-37685497:-
Coord C1 exon
chr3:37685393-37685497
Coord A exon
chr3:37682936-37683046
Coord C2 exon
chr3:37682361-37682471
Length
111 bp
Sequences
Splice sites
3' ss Seq
TTCCTTCCTACTCATATTAGAAA
3' ss Score
5.81
5' ss Seq
GAGGTAGTA
5' ss Score
4.45
Exon sequences
Seq C1 exon
GTGAAATACAAAGAAAAATATGAAAAAGAACGAGGCAAGCCCATGCTGGACTTTGAGACTCCAACATACATCACTGCCAAAGAGTCTCAGCAGATGCAGAGTGGG
Seq A exon
AAAGAATATAGGAAAGATTACGAAGAGTCCATTAAAGGCAGAAACCTGACGGGCCTGGAGGTCACGCCAGCATTGTTACATGTCAGACATGCAACCAAAATAGCGAGCGAG
Seq C2 exon
AAAGAGTATAGGAAAGACCTAGAAGAAAGCATCCGGGGCAGAGGTCTCACTGAAATGGAAGATACTCCCGAAATGCTGAGAGCCAAGAATGCAACTCAAATCCTCAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006783-'141-151,'141-149,143-151
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.686 A=0.378 C2=0.838
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
A:
PF0088013=Nebulin=PD(37.9=29.7),PF0088013=Nebulin=PU(57.1=43.2)
C2:
PF0088013=Nebulin=PD(35.7=27.0),PF0088013=Nebulin=PU(55.2=43.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAATATGAAAAAGAACGAGGCAAGC
R:
CTCATTGAGGATTTGAGTTGCAT
Band lengths:
202-313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]