BtaEX0024158 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006907 | NEB
Description
nebulin [Source:HGNC Symbol;Acc:HGNC:7720]
Coordinates
chr2:44727856-44730009:+
Coord C1 exon
chr2:44727856-44727960
Coord A exon
chr2:44729380-44729490
Coord C2 exon
chr2:44729899-44730009
Length
111 bp
Sequences
Splice sites
3' ss Seq
TTCCTTCCTACTTACATTAGAAA
3' ss Score
5
5' ss Seq
GAGGTAGTG
5' ss Score
4.58
Exon sequences
Seq C1 exon
GTGAAATACAAAGAAAAGTACGAAAAGGAACGAGGGAAGCCTATGCTAGATTTTGAAACACCAACGTACATCACTGCCAAGGAGTCTCAGCAGATGCAGAGTGGG
Seq A exon
AAAGAATATAGGAAAGATTATGAAGAGTCCATTAAAGGCAGAAACCTGACTGGCCTGGAGGTCACACCAGCTCTATTACATGTCAAATATGCAACCAAAATAGCCAGCGAG
Seq C2 exon
AAAGAGTACAGGAAAGATCTAGAGGAAAGCATCCGTGGGAAGGGTCTCAGCGAAATGGAAGACACACCGGATATGCTAAGAGCAAAGAATGCCACCCAGATCCTCAACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006907_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.486 A=0.243 C2=0.757
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
A:
PF0088013=Nebulin=PD(37.9=29.7),PF0088013=Nebulin=PU(57.1=43.2)
C2:
PF0088013=Nebulin=PD(35.7=27.0),PF0088013=Nebulin=PU(55.2=43.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAAAGAAAAGTACGAAAAGGAACG
R:
CTCGTTGAGGATCTGGGTGGC
Band lengths:
210-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development