BtaEX0024159 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006907 | NEB
Description
nebulin [Source:HGNC Symbol;Acc:HGNC:7720]
Coordinates
chr2:44729380-44730672:+
Coord C1 exon
chr2:44729380-44729490
Coord A exon
chr2:44729899-44730009
Coord C2 exon
chr2:44730559-44730672
Length
111 bp
Sequences
Splice sites
3' ss Seq
GCTTGTATTTTGTGCTATAGAAA
3' ss Score
6.52
5' ss Seq
GAGGTGGGC
5' ss Score
6.32
Exon sequences
Seq C1 exon
AAAGAATATAGGAAAGATTATGAAGAGTCCATTAAAGGCAGAAACCTGACTGGCCTGGAGGTCACACCAGCTCTATTACATGTCAAATATGCAACCAAAATAGCCAGCGAG
Seq A exon
AAAGAGTACAGGAAAGATCTAGAGGAAAGCATCCGTGGGAAGGGTCTCAGCGAAATGGAAGACACACCGGATATGCTAAGAGCAAAGAATGCCACCCAGATCCTCAACGAG
Seq C2 exon
AAAGAATATAAGAGAGATCTGGAGCTGGAAGTCAAAGGAAGAGGCCTGAATGCCATGGCCAATGAAACTCCTGACTTCCTGAGAGCCAGGAATGCTACAGATATTGCCAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006907_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.243 A=0.757 C2=0.237
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=29.7),PF0088013=Nebulin=PU(57.1=43.2)
A:
PF0088013=Nebulin=PD(35.7=27.0),PF0088013=Nebulin=PU(55.2=43.2)
C2:
PF0088013=Nebulin=PD(37.9=28.9),PF0088013=Nebulin=PU(55.2=42.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATTATGAAGAGTCCATTAAAGGCA
R:
TGGCTGGCAATATCTGTAGCA
Band lengths:
210-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development