MmuEX6101309 @ mm10
Exon Skipping
Gene
ENSMUSG00000026950 | Neb
Description
nebulin [Source:MGI Symbol;Acc:MGI:97292]
Coordinates
chr2:52163937-52165277:-
Coord C1 exon
chr2:52165167-52165277
Coord A exon
chr2:52164592-52164702
Coord C2 exon
chr2:52163937-52164050
Length
111 bp
Sequences
Splice sites
3' ss Seq
GTTTTATTTTTGTAATCTAGAAA
3' ss Score
6.71
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
AAAGAATATAGGAAAGATTATGAAGAGTCCATTAAAGGCAGAAACCTGACGGGCCTGGAGGTCACGCCAGCATTGTTACATGTCAGACATGCAACCAAAATAGCAAGCGAG
Seq A exon
AAAGAGTATAGGAAAGACCTGGAAGAAAGCATCCGAGGCAGAGGTCTCACTGAGATGGAAGATACTCCTGACATGCTGAGAGCCAAGAATGCCACTCAGATCCTCAATGAG
Seq C2 exon
AAAGAATATAAGCGAGACCTGGAGCTGGAAGTCAAAGGAAGAGGCCTGAATGCCATGGCCAACGAGACTCCAGATTTTATGCGGGCCAGGAATGCTACCGACATTGCCAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026950-'158-166,'158-165,159-166
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.459 A=0.879 C2=0.523
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=29.7),PF0088013=Nebulin=PU(57.1=43.2)
A:
PF0088013=Nebulin=PD(35.7=27.0),PF0088013=Nebulin=PU(55.2=43.2)
C2:
PF0088013=Nebulin=PD(37.9=28.9),PF0088013=Nebulin=PU(55.2=42.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATTATGAAGAGTCCATTAAAGGCA
R:
CTGGCTGGCAATGTCGGTAG
Band lengths:
211-322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types