GgaEX1002801 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F6U7Z0]
Coordinates
chr7:34679907-34697433:-
Coord C1 exon
chr7:34697323-34697433
Coord A exon
chr7:34696754-34696864
Coord C2 exon
chr7:34679907-34679999
Length
111 bp
Sequences
Splice sites
3' ss Seq
TGCTTTTCTTTCTTTCACAGAAA
3' ss Score
11.52
5' ss Seq
GAGGTATGG
5' ss Score
8.98
Exon sequences
Seq C1 exon
AAAGAATATAAGAGGGACTTTGAAGAGTCCATTAAGGGCAGAAACCTTACTGGCTTGGAGATAACACCATCCTTATTACATGTCAAATATGCAACCAAAATAGCAAGCGAG
Seq A exon
AAAGAATACAGGAAGGATCTGGAGGAGGGTGTCAAAGGTAAAGGACTATCTGTTTTGGAGGAGACTCCAGACATGTTAAGAGCAAAGAATGCAACTCAGATCCTGAATGAG
Seq C2 exon
GTTTTGTACAAAGAAAATGTGGGGAAAGTGACCCCAACACCCATCACTCCAGAGATGGAGAGAGTCAAACGCAATCAAGAGATCATTAGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012495_MULTIEX1-19/33=18-31
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=0.394 C2=0.530
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=29.7),PF0088013=Nebulin=PU(55.2=43.2)
A:
PF0088013=Nebulin=PD(37.9=29.7),PF0088013=Nebulin=PU(55.2=43.2)
C2:
PF0088013=Nebulin=PD(33.3=29.0),PF0088013=Nebulin=PU(57.1=51.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAATATAAGAGGGACTTTGAAGAGT
R:
CGAGCTAATGATCTCTTGATTGCG
Band lengths:
202-313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]