GgaEX1002801 @ galGal3
Exon Skipping
Gene
ENSGALG00000012495 | Q9DEH4_CHICK
Description
NA
Coordinates
chr7:36822775-36825357:-
Coord C1 exon
chr7:36825253-36825357
Coord A exon
chr7:36823730-36823840
Coord C2 exon
chr7:36822775-36822888
Length
111 bp
Sequences
Splice sites
3' ss Seq
TGCTTTTCTTTCTTTCACAGAAA
3' ss Score
11.52
5' ss Seq
GAGGTATGG
5' ss Score
8.98
Exon sequences
Seq C1 exon
GTGAAATACAAGGAAAAGTATGAGAAGGAAAAAGGCAAACCTATGCTGGACTTTGAAACTCCAACATACCTAACTGCAAAGGAATCTCAGCTCATGCAGAGTGAG
Seq A exon
AAAGAATACAGGAAGGATCTGGAGGAGGGTGTCAAAGGTAAAGGACTATCTGTTTTGGAGGAGACTCCAGACATGTTAAGAGCAAAGAATGCAACTCAGATCCTGAATGAG
Seq C2 exon
AAAGAGTACAAAAAAGCCTTGGAATTAGAAATTAAAGGAAAAGGTCTGTCAGAACTGGCTTTGGAAACACCTGATTTTGTGAGAGCAAAGAATGCCACTGACATTGCTAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012495-'132-133,'132-132,134-133=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.297 C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
A:
PF0088013=Nebulin=PD(37.9=29.7),PF0088013=Nebulin=PU(55.2=43.2)
C2:
PF0088013=Nebulin=PD(37.9=28.9),PF0088013=Nebulin=PU(55.2=42.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGGAAAAGTATGAGAAGGAAAAA
R:
GGCTAGCAATGTCAGTGGCAT
Band lengths:
210-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]