GgaEX0019998 @ galGal3
Exon Skipping
Gene
ENSGALG00000013286 | KDM2A
Description
NA
Coordinates
chrUn_random:27634430-27636350:-
Coord C1 exon
chrUn_random:27636272-27636350
Coord A exon
chrUn_random:27634979-27635025
Coord C2 exon
chrUn_random:27634430-27634608
Length
47 bp
Sequences
Splice sites
3' ss Seq
GCAAGGTGTTTGTCCCGCAGGAT
3' ss Score
7.52
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
ACTTTACAGTTGAATACATCCAGCGAGGTGGCCTGAGAGACCCCCTCATCTTCAGGAGCTCTGATGGCCTGGGTATAAA
Seq A exon
GATGCCAGATCCGGACTTCATCGTGAACGATGTGCGGCTGTGTGTCG
Seq C2 exon
GGAGCCGGCGGATGGTGGATGTCATGGATGTAAACACACAGAGGGACATAGAGATGTCCATGGCACAGTGGGCACGCTACTATGAAACACCTGAAGCTGAACGGGAGAAACTTTACAATGTCATCAGCCTGGAGTTCAGCCACACCAAACTGGAAAACCTGGTGCAGAGACCTGCTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013286-'3-3,'3-2,5-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATACATCCAGCGAGGTGGC
R:
CCACTGTGCCATGGACATCTC
Band lengths:
139-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]