MmuEX6030463 @ mm9
Exon Skipping
Gene
ENSMUSG00000054611 | Kdm2a
Description
lysine (K)-specific demethylase 2A [Source:MGI Symbol;Acc:MGI:1354736]
Coordinates
chr19:4356748-4362055:-
Coord C1 exon
chr19:4361977-4362055
Coord A exon
chr19:4361538-4361584
Coord C2 exon
chr19:4356748-4356926
Length
47 bp
Sequences
Splice sites
3' ss Seq
TACTGGTGTTTATTTCACAGGAT
3' ss Score
8.11
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
ATTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA
Seq A exon
GATGCCGGATCCAGACTTCACAGTGAATGATGTCAAAATGTGTGTGG
Seq C2 exon
GGAGTCGTCGGATGGTGGATGTCATGGATGTGAACACACAGAAGGGGATTGAAATGACCATGGCACAATGGACACGATACTATGAGACTCCAGAGGAAGAGCGAGAAAAACTCTATAATGTTATCAGCCTAGAGTTTAGCCACACCAGGCTTGAGAATATGGTGCAGCGGCCTTCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054611-'9-11,'9-9,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.050 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGTATATCCAGCGGGGTGG
R:
GTGTCCATTGTGCCATGGTCA
Band lengths:
144-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: