BtaEX6103824 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000044032 | KDM2A
Description
lysine (K)-specific demethylase 2A [Source:HGNC Symbol;Acc:HGNC:13606]
Coordinates
chr29:45783476-45789719:+
Coord C1 exon
chr29:45783476-45783560
Coord A exon
chr29:45783988-45784034
Coord C2 exon
chr29:45789541-45789719
Length
47 bp
Sequences
Splice sites
3' ss Seq
TACTGGTGTTTGTTTCATAGGAT
3' ss Score
8.51
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
TGACAGATTTTAACGTAGAGTATATCCAGCGGGGTGGCTTAAGAGATCCTCTGATTTTCAAGAATTCCGATGGACTTGGAATAAA
Seq A exon
GATGCCAGATCCAGACTTCACTGTGAATGATGTCAAAATGTGTGTGG
Seq C2 exon
GGAGTCGTCGTATGGTGGATGTCATGGATGTGAACACACAGAAAGGCATTGAAATGACCATGGCTCAGTGGACACGCTACTATGAGACCCCAGAGGAGGAGCGAGAAAAACTCTATAATGTCATCAGCTTAGAGTTTAGCCACACCAGGCTGGAGAACATGGTGCAGAGGCCCTCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000044032-'5-7,'5-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGTATATCCAGCGGGGTGG
R:
TGTCCACTGAGCCATGGTCAT
Band lengths:
143-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]