DreEX6057703 @ danRer10
Exon Skipping
Gene
ENSDARG00000078133 | kdm2ab
Description
lysine (K)-specific demethylase 2Ab [Source:ZFIN;Acc:ZDB-GENE-101007-5]
Coordinates
chr14:21462042-21462548:+
Coord C1 exon
chr14:21462042-21462120
Coord A exon
chr14:21462235-21462281
Coord C2 exon
chr14:21462370-21462548
Length
47 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTTCTTTTTTGTAGGAT
3' ss Score
12.45
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
ACTTCACCTTGGAGTACATCCAACGGGAGGGTCTCCGAGACCCCATTATCTTCAAGAAAGCAGATGGTCTTGGCATAAA
Seq A exon
GATGCCTGACCCAGACTTTAGCGTCAGTGATGTGAAATTATTTGTGG
Seq C2 exon
GCAGTCGAAGGATGATTGATGTGATGGATGCAGCCACTCAAAAAGGCATCGAGATGTCAATGGGCCAGTGGAGGAGATACTACGAGACGCCGGCATCTCAGCGCGAGAAGCTGTACAATGTCATCAGCCTTGAGTTCAGCCACACAAAATTAGAGCATCTTGTTAAGAGACCAACCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078133-'10-6,'10-5,11-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAAGCAGATGGTCTTGGCA
R:
CATTGTACAGCTTCTCGCGCT
Band lengths:
145-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]