RnoEX0046397 @ rn6
Exon Skipping
Gene
ENSRNOG00000019145 | Kdm2a
Description
lysine demethylase 2A [Source:RGD Symbol;Acc:1309419]
Coordinates
chr1:219603024-219607635:-
Coord C1 exon
chr1:219607557-219607635
Coord A exon
chr1:219607125-219607171
Coord C2 exon
chr1:219603024-219603202
Length
47 bp
Sequences
Splice sites
3' ss Seq
TACTGGTGTTTATTTCATAGGAT
3' ss Score
7.9
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
ATTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGAGACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA
Seq A exon
GATGCCGGATCCAGACTTCACAGTGAATGATGTCAAAATGTGTGTGG
Seq C2 exon
GGAGTCGTCGGATGGTGGATGTCATGGACGTGAACACACAGAAGGGGATTGAAATGACCATGGCGCAATGGACACGATACTATGAGACTCCAGAGGAAGAGCGAGAGAAACTCTATAATGTTATCAGCCTAGAGTTTAGCCACACCAGGCTTGAGAATATGGTACAGCGGCCTTCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019145-'10-7,'10-6,12-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.059 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGTATATCCAGCGGGGTGG
R:
CCATTGCGCCATGGTCATTTC
Band lengths:
140-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]