GgaEX1031454 @ galGal4
Exon Skipping
Gene
ENSGALG00000013286 | KDM2A
Description
lysine (K)-specific demethylase 2A [Source:HGNC Symbol;Acc:HGNC:13606]
Coordinates
JH376180.1:79289-81209:+
Coord C1 exon
JH376180.1:79289-79367
Coord A exon
JH376180.1:80614-80660
Coord C2 exon
JH376180.1:81031-81209
Length
47 bp
Sequences
Splice sites
3' ss Seq
GCAAGGTGTTTGTCCCGCAGGAT
3' ss Score
7.52
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
ACTTTACAGTTGAATACATCCAGCGAGGTGGCCTGAGAGACCCCCTCATCTTCAGGAGCTCTGATGGCCTGGGTATAAA
Seq A exon
GATGCCAGATCCGGACTTCAGCGTGAACGATGTGCGGCTGTGTGTCG
Seq C2 exon
GGAGCCGGCGGATGGTGGATGTCATGGATGTAAACACACAGAGGGACATAGAGATGTCCATGGCACAGTGGGCACGCTACTATGAAACACCTGAAGCTGAACGGGAGAAACTTTACAATGTCATCAGCCTGGAGTTCAGCCACACCAAACTGGAAAACCTGGTGCAGAGACCTGCTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013286_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATACATCCAGCGAGGTGGC
R:
CCACTGTGCCATGGACATCTC
Band lengths:
139-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]