DreEX0041110 @ danRer10
Exon Skipping
Gene
ENSDARG00000059653 | kdm2aa
Description
lysine (K)-specific demethylase 2Aa [Source:ZFIN;Acc:ZDB-GENE-061215-144]
Coordinates
chr1:44145856-44146339:+
Coord C1 exon
chr1:44145856-44145934
Coord A exon
chr1:44146036-44146082
Coord C2 exon
chr1:44146161-44146339
Length
47 bp
Sequences
Splice sites
3' ss Seq
TTATAATCTTTCTGTTTCAGAAT
3' ss Score
11.08
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
Exon sequences
Seq C1 exon
ATTTCTCTTATGAGTACGTCCAGAGGCATGGTCTCCGGGATCCTATCATCTTTGAGAAACCCGAAGGTCTTGGCATCAA
Seq A exon
AATGCCAGATCCAGACTTCACAGTAAATGATGTGAAGTTGTTTGTAG
Seq C2 exon
GAAGTCGACGGATAGTTGACGTGATGGACGTGGCTACTCAGAAAGGGACGGAGATGTCGATGGCCCAGTGGAGGCGCTACTACGAGACTCCTCCCTCTCAGAGAGAAAAGCTTTATAATGTAATCAGCCTTGAGTTTAGCCACACTAAACTAGAGACCCTTGTCAAAAGACCCTCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059653-'7-9,'7-8,9-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.059 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGGTCTCCGGGATCCTAT
R:
GAGTCTCGTAGTAGCGCCTCC
Band lengths:
144-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]