GgaEX0020084 @ galGal3
Exon Skipping
Gene
ENSGALG00000013419 | PBX4
Description
NA
Coordinates
chrUn_random:30306851-30310662:-
Coord C1 exon
chrUn_random:30310589-30310662
Coord A exon
chrUn_random:30307410-30307651
Coord C2 exon
chrUn_random:30306851-30307041
Length
242 bp
Sequences
Splice sites
3' ss Seq
CCCTCTTTATATCTACCCAGTGT
3' ss Score
6.99
5' ss Seq
CAGGTGATC
5' ss Score
4.28
Exon sequences
Seq C1 exon
GAAACACGCCCTGAACTGCCACAGGATGAAGCCTGCTCTGTTCAGTGTGCTCTGTGAGATCAAGGAGAAAACAG
Seq A exon
TGTTAAGTATTCGTGGTATTCAGGAAGAAGACCCCCCCGATGCCCAACTAATGAGGCTAGATAACATGTTGCTGGCGGAGGGCGTCTCCGGCCCCGAGAAAAGAGGAAGAGGAGCACCGATGGCTGTAGCAGCAACACCAGGTGGCTGTCCAAATGACAATAGCATTGAGCACTCTGACTACAGGGCCAAGCTGTCACAGATCCGACAGATATACCACTCTGAGCTAGAGAAATATGAACAG
Seq C2 exon
GCCTGCAGCGAGTTCACCACCCACGTCATGAACCTGCTCAGGGAACAGAGCCGGACGAGGCCCATTTCTCCCAAAGAAATCGAGCGGATGGTGAACATCATCCACGGCAAATTCAGCACCATTCAGATGCAGCTGAAGCAGAGCACGTGCGAGGCGGTGATGATCCTCCGCTCACGCTTCCTCGATGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013419-'2-3,'2-1,4-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.192 A=0.679 C2=0.219
Domain overlap (PFAM):
C1:
PF037928=PBC=FE(12.8=100)
A:
PF037928=PBC=FE(41.0=100),PF070286=DUF1319=PU(43.6=50.6),PF040917=Sec15=PU(43.1=34.6)
C2:
PF037928=PBC=PD(31.3=95.3),PF070286=DUF1319=PD(54.3=79.7),PF040917=Sec15=PD(53.8=54.7),PF0004624=Homeobox=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACACGCCCTGAACTGCC
R:
CTTGCATCGAGGAAGCGTGAG
Band lengths:
265-507
Functional annotations
There are 0 annotated functions for this event