RnoEX0063687 @ rn6
Exon Skipping
Gene
ENSRNOG00000010736 | Pbx4
Description
PBX homeobox 4 [Source:RGD Symbol;Acc:1305100]
Coordinates
chr16:21306016-21316172:-
Coord C1 exon
chr16:21316099-21316172
Coord A exon
chr16:21310921-21311162
Coord C2 exon
chr16:21306016-21306169
Length
242 bp
Sequences
Splice sites
3' ss Seq
TCTGCCTCTGTTCCCTCCAGCTG
3' ss Score
10.67
5' ss Seq
CAGGTGATC
5' ss Score
4.28
Exon sequences
Seq C1 exon
AAAGCATGCCCTGAACTGCCATCGGATGAAGTCTGCTCTCTTCAGTGTGCTCAGCGAGATCAAGGGGAAGACTG
Seq A exon
CTGTGAGCGTCCAGACGCAGGAAGAGGACCCTCCCGATGCCCAGCTGCTGAGGTTGGATAACATGCTGCTGGCTGAGGGTGTGTCCAGGCCAGAGAAGCGAGGACGAGGAGGAGCAGCGGCAGGCAGCACAGCAACACCAGGTGGCTGCCCAAATGACAATAGCATTGAACACTCAGACTACAGGGCCAAGCTGTCCCAGATCCGACAGATTTACCACTCAGAGCTAGAGAAGTATGAACAG
Seq C2 exon
GTCTCTAACTGGTTCGGCAACAAAAGAATCCGGTACAAAAAGAATACGGGGAAATTTCAAGAAGAAGCCACCATGTACACGGGGAAAACATCCACAGTCACTAAGACCCGGGTCTCCGGGGGTCAGACCAGCTGCCAGTCCACACCCAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010736_MULTIEX1-1/4=C1-4
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.269 A=0.716 C2=0.606
Domain overlap (PFAM):
C1:
PF037928=PBC=FE(12.8=100),PF070286=DUF1319=FE(14.9=100)
A:
PF037928=PBC=FE(40.8=100),PF070286=DUF1319=PU(32.9=34.6),PF083976=IMD=PU(20.3=30.9)
C2:
PF0004624=Homeobox=PD(21.7=25.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCATGCCCTGAACTGCC
R:
CTGGGCTGGGTGTGGACT
Band lengths:
228-470
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]