MmuEX0033854 @ mm9
Exon Skipping
Gene
ENSMUSG00000031860 | Pbx4
Description
pre B cell leukemia homeobox 4 [Source:MGI Symbol;Acc:MGI:1931321]
Coordinates
chr8:72382979-72390502:+
Coord C1 exon
chr8:72382979-72383052
Coord A exon
chr8:72388211-72388449
Coord C2 exon
chr8:72390367-72390502
Length
239 bp
Sequences
Splice sites
3' ss Seq
TCTGCCTCTGTTCCCTCTAGCCG
3' ss Score
9.44
5' ss Seq
CAGGTGATC
5' ss Score
4.28
Exon sequences
Seq C1 exon
AAAGCATGCCCTGAACTGCCATCGGATGAAGTCTGCTCTCTTCAGTGTGCTCTGCGAGATCAAGGGGAAGACTG
Seq A exon
CCGTGAGCATCCAGTTTCAGGAAGAGGACCCTCCCGATGCCCAGCTGCTGAGGTTGGATAACATGCTGCTGGCTGAGGGTGTGTCCAGGCCAGAGAAGAGAGGCCGAGGAGCAGCAGCAGGCAGCACAGCAACACCAGGTGGCTGTCCAAATGACAATAGCATTGAGCACTCAGACTACAGGGCCAAGCTGTCCCAGATCCGACAGATTTACCACTCTGAGCTAGAGAAGTATGAACAG
Seq C2 exon
GCGCAAGCGGCGGAATTTCAGCAAGCAGGCCACAGACGTGCTGAATGAATATTTCTATTCCCATTTGAGCAACCCTTACCCCAGTGAAGAGACCAAAGAAGAGCTGGCCAGGAAGGGTGGCATCACAGTGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031860_MULTIEX1-2/5=1-4
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.116 A=0.487 C2=0.302
Domain overlap (PFAM):
C1:
PF037928=PBC=FE(12.8=100),PF070286=DUF1319=FE(14.4=100)
A:
PF037928=PBC=FE(40.3=100),PF070286=DUF1319=FE(45.4=100),PF040917=Sec15=PU(30.1=35.0),PF083976=IMD=PU(20.3=31.2)
C2:
PF040917=Sec15=PD(0.1=0.0),PF083976=IMD=PD(26.8=71.7),PF0004624=Homeobox=PU(75.0=97.8)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCATGCCCTGAACTGCC
R:
GACACTGTGATGCCACCCTTC
Band lengths:
206-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types