DmeEX6002713 @ dm6
Exon Skipping
Gene
FBgn0000611 | exd
Description
The gene extradenticle is referred to in FlyBase by the symbol Dmelexd (CG8933, FBgn0000611). It is a protein_coding_gene from Dmel. It has 5 annotated transcripts and 5 polypeptides (1 unique). Gene sequence location is X:15992468..15996509. Its molecular function is described by 12 unique terms, many of which group under: binding; protein binding; DNA binding; transcription regulator activity; heterocyclic compound binding. It is involved in the biological process described with 12 unique terms, many of which group under: animal organ development; anatomical structure morphogenesis; embryo development; oenocyte differentiation; multicellular organism development. 65 alleles are reported. The phenotypes of these alleles manifest in: myofibril; organelle; adult abdominal segment 1; tarsal segment; midline crossing tract. The phenotypic classes of alleles include: embryonic/larval segmentation phenotype; some die during P-stage; increased mortality; phenotype. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderately high expression. Peak expression observed at stages throughout embryogenesis, during late larval stages, during early pupal stages.
Coordinates
chrX:15993472-15994605:+
Coord C1 exon
chrX:15993472-15993773
Coord A exon
chrX:15993965-15994283
Coord C2 exon
chrX:15994347-15994605
Length
319 bp
Sequences
Splice sites
3' ss Seq
CTTCGTTAAAACTATTACAGTCC
3' ss Score
4.82
5' ss Seq
GAGGTTGGT
5' ss Score
6.36
Exon sequences
Seq C1 exon
AAACTTGGATTTGTAGCTTGCTTTGTGTTGCGGCACCATGGAGGACCCCAATCGCATGTTGGCCCACACCGGCGGCATGATGGCTCCGCAAGGATACGGCTTGTCTGGCCAGGATGATGGCCAGAATGCCGGCAGCGAGAACGAGGTGCGCAAGCAGAAGGACATCGGCGAGATATTGCAACAGATAATGAGTATCTCGGAGCAATCACTTGACGAGGCCCAGGCCAGAAAACATACACTAAACTGTCACCGAATGAAGCCGGCACTTTTCTCTGTACTTTGCGAAATCAAGGAGAAGACCG
Seq A exon
TCCTCTCGATTCGCAACACCCAGGAGGAGGAGCCCCCAGATCCGCAACTGATGCGCTTGGACAACATGCTGATTGCCGAGGGCGTGGCCGGACCCGAGAAGGGCGGTGGCGGAGCAGCGGCTGCCTCTGCGGCTGCGGCCAGCCAGGGCGGTTCCCTGTCCATCGATGGTGCTGACAATGCCATTGAGCATTCCGACTACCGTGCCAAGCTGGCACAGATCCGTCAAATATATCACCAGGAATTGGAGAAGTACGAGCAGGCATGCAACGAGTTCACCACGCATGTCATGAATCTTCTACGCGAACAGAGTCGCACGAG
Seq C2 exon
ACCCATTACACCAAAGGAAATCGAGCGAATGGTGCAGATCATCCACAAAAAGTTTAGTTCCATACAAATGCAGCTGAAGCAGTCGACCTGCGAGGCTGTAATGATACTTCGTTCGCGTTTCCTGGACGCACGCCGCAAACGCCGCAATTTCAGCAAGCAGGCATCCGAGATTCTCAACGAGTACTTCTACAGTCACTTGAGCAACCCATATCCATCCGAAGAGGCCAAAGAGGAGTTGGCACGAAAGTGTGGCATCACG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0000611-'5-5,'5-3,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.730 A=0.477 C2=0.184
Domain overlap (PFAM):
C1:
PF037928=PBC=PU(27.3=62.9)
A:
PF037928=PBC=FE(51.7=100),PF070286=DUF1319=PU(60.5=48.6),PF040917=Sec15=PU(58.8=46.7)
C2:
PF037928=PBC=PD(20.5=48.3),PF070286=DUF1319=PD(38.4=37.9),PF040917=Sec15=PD(40.0=39.1),PF0004624=Homeobox=PU(70.0=48.3)
Main Inclusion Isoform:
FBpp0073940

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
FBpp0073942, FBpp0305514, FBpp0305515
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAATCACTTGACGAGGCCCAG
R:
CACACTTTCGTGCCAACTCCT
Band lengths:
351-670
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)