MmuEX6077126 @ mm10
Exon Skipping
Gene
ENSMUSG00000034673 | Pbx2
Description
pre B cell leukemia homeobox 2 [Source:MGI Symbol;Acc:MGI:1341793]
Coordinates
chr17:34593572-34594428:+
Coord C1 exon
chr17:34593572-34593645
Coord A exon
chr17:34593867-34594114
Coord C2 exon
chr17:34594238-34594428
Length
248 bp
Sequences
Splice sites
3' ss Seq
TCTGTTTGCCTGCCTGCTAGGCC
3' ss Score
8.15
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GAAACATGCCCTAAACTGTCACCGAATGAAACCTGCCCTGTTTAGTGTCCTGTGTGAAATCAAGGAGAAAACTG
Seq A exon
GCCTTAGCATTCGGAGCTCCCAAGAGGAGGAGCCCGTGGACCCACAGCTGATGCGCCTGGACAACATGCTTCTGGCAGAAGGTGTGGCTGGACCCGAGAAAGGGGGCGGCTCCGCAGCAGCTGCTGCAGCTGCCGCAGCCTCCGGTGGTGGCGTATCCCCGGACAACTCCATCGAACACTCAGACTATCGCAGCAAGCTTGCCCAGATCCGCCACATCTACCACTCAGAGCTGGAGAAGTATGAGCAG
Seq C2 exon
GCATGCAATGAGTTCACAACTCACGTCATGAACCTGCTGAGGGAGCAGAGCCGCACTCGCCCGGTCGCCCCCAAGGAGATGGAGCGCATGGTTAGCATCATCCATCGAAAGTTCAGCGCCATTCAGATGCAGCTGAAGCAAAGCACCTGTGAGGCCGTCATGATCCTGCGTTCTCGCTTCCTGGATGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034673-'4-12,'4-9,7-12=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.121 A=0.551 C2=0.245
Domain overlap (PFAM):
C1:
PF037928=PBC=FE(12.6=100)
A:
PF037928=PBC=FE(41.4=100)
C2:
PF037928=PBC=PD(30.8=95.3),PF0004624=Homeobox=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGCCCTAAACTGTCACCG
R:
GGCATCCAGGAAGCGAGAAC
Band lengths:
260-508
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types