BtaEX6098204 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014421 | PBX2
Description
Bos taurus pre-B-cell leukemia homeobox 2 (PBX2), mRNA. [Source:RefSeq mRNA;Acc:NM_001256883]
Coordinates
chr23:27004413-27005247:+
Coord C1 exon
chr23:27004413-27004486
Coord A exon
chr23:27004709-27004956
Coord C2 exon
chr23:27005057-27005247
Length
248 bp
Sequences
Splice sites
3' ss Seq
TCCACTCGCCTGCACGCTAGGCC
3' ss Score
5.71
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GAAACACGCCCTAAACTGCCACCGCATGAAGCCTGCTCTCTTTAGCGTCCTGTGTGAAATCAAGGAGAAAACTG
Seq A exon
GCCTCAGCATTCGAAGCTCCCAAGAGGAGGAGCCTGTGGATCCACAGCTGATGCGCTTGGACAACATGCTTCTGGCAGAGGGTGTGGCTGGGCCTGAGAAAGGGGGTGGCTCAGCGGCTGCAGCGGCAGCAGCTGCAGCCTCCGGGGGCGGAGTGTCCCCTGACAACTCCATCGAACACTCGGACTATCGCAGCAAACTTGCCCAGATCCGCCACATTTACCACTCGGAGCTGGAGAAATATGAGCAG
Seq C2 exon
GCGTGTAACGAGTTCACAACCCACGTCATGAACCTGCTGAGGGAGCAGAGCCGCACGCGGCCCGTGGCACCCAAGGAGATGGAGCGCATGGTGAGCATCATCCACCGGAAGTTCAGCGCCATCCAGATGCAACTCAAGCAGAGCACCTGCGAGGCCGTCATGATCCTACGTTCCCGCTTCCTGGACGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014421-'3-3,'3-1,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.231 A=0.651 C2=0.234
Domain overlap (PFAM):
C1:
PF037928=PBC=FE(12.6=100)
A:
PF037928=PBC=FE(41.4=100)
C2:
PF037928=PBC=PD(30.8=95.3),PF0004624=Homeobox=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACACGCCCTAAACTGCCA
R:
CGTCCAGGAAGCGGGAAC
Band lengths:
261-509
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]