DreEX6042904 @ danRer10
Exon Skipping
Gene
ENSDARG00000019717 | pbx2
Description
pre-B-cell leukemia homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-000405-5]
Coordinates
chr16:48675175-48684955:+
Coord C1 exon
chr16:48675175-48675248
Coord A exon
chr16:48679142-48679386
Coord C2 exon
chr16:48684765-48684955
Length
245 bp
Sequences
Splice sites
3' ss Seq
TAATGGATTTCCATTTTTAGGTC
3' ss Score
9.51
5' ss Seq
CAGGTACAT
5' ss Score
7.79
Exon sequences
Seq C1 exon
AAAACACGCTCTGAACTGTCATCGTATGAAACCGGCCTTATTCAGCGTTCTGTGCGAAATTAAGGAGAAAACTG
Seq A exon
GTCTTTCCATGAGAAATGTTCAGGAGGAGGAGCCTCCTGACCCACAGCTCGTACGATTGGACAACATGCTGCTGGCTGAAGGTGTAGCCGGGCCAGAGAAAGGGGGCGGAGCCGCAGCGGCAGTATCTGCTGCGACCAGCTCTGGCGGGATGTCCCCTGACAGCTCATTGGAACACTCCGACTATAAAAGCAAGTTGAGCCAAATTCGGAACATTTACCACACAGAGCTGGAAAAATACGAGCAG
Seq C2 exon
GCCTGCAGTGAGTTCACTACCCATGTTATGAATCTGCTGAGGGAGCAGTCTCGCACCCGGCCGGTGTCTCCACGTGAGATCGAGCGCATGGTGGCCATCATTCACCGCAAGTTCAGCTCCATTCAGACGCAGCTCAAACAGAGCACCTGTGAAGCCGTCATGATTCTACGCTCACGGTTTTTGGACGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019717-'1-3,'1-1,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.231 A=0.695 C2=0.206
Domain overlap (PFAM):
C1:
PF037928=PBC=FE(12.6=100)
A:
PF037928=PBC=FE(40.7=100),PF070286=DUF1319=PU(53.5=74.4)
C2:
PF037928=PBC=PD(30.7=95.3),PF070286=DUF1319=PD(44.7=79.7),PF0004624=Homeobox=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGCTCTGAACTGTCATCGT
R:
CTGGCGTCCAAAAACCGTGAG
Band lengths:
261-506
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]