GgaEX1042240 @ galGal4
Exon Skipping
Gene
ENSGALG00000003429 | PBX1A
Description
pre-B-cell leukemia transcription factor 1 [Source:RefSeq peptide;Acc:NP_990077]
Coordinates
chr8:5208844-5291819:-
Coord C1 exon
chr8:5291746-5291819
Coord A exon
chr8:5211390-5211634
Coord C2 exon
chr8:5208844-5209034
Length
245 bp
Sequences
Splice sites
3' ss Seq
TTCCCTTTGTGTCCCCACAGTGC
3' ss Score
12.2
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
GAAACACGCTTTAAACTGCCACAGGATGAAGCCGGCTCTTTTTAATGTCTTGTGTGAAATCAAAGAGAAAACAG
Seq A exon
TGCTGAGCATCCGGGGAGCGCAGGAAGAGGAGCCCACGGACCCTCAGCTGATGCGGTTAGACAACATGCTGCTGGCCGAGGGCGTCGCTGGCCCTGAGAAAGGAGGGGGCTCTGCTGCTGCTGCCGCTGCCGCCGCCGCATCGGGAGGAGCCGGATCCGACAACTCGGTGGAGCACTCCGACTACAGAGCCAAGCTGTCCCAGATCCGGCAGATCTACCACACAGAGCTGGAGAAGTACGAGCAG
Seq C2 exon
GCGTGCAACGAATTCACCACCCACGTGATGAACCTGCTGCGTGAGCAGAGCCGGACCCGGCCCATCTCACCAAAGGAGATAGAGCGGATGGTGAGCATCATCCACCGCAAGTTCAGCTCCATCCAGATGCAGTTGAAGCAAAGCACGTGTGAAGCCGTCATGATCTTGCGCTCCCGATTTCTGGACGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003429-'7-10,'7-9,32-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.192 A=0.671 C2=0.219
Domain overlap (PFAM):
C1:
PF037928=PBC=FE(12.6=100)
A:
PF037928=PBC=FE(40.9=100),PF070286=DUF1319=PU(42.6=48.8),PF040917=Sec15=PU(33.3=32.9)
C2:
PF037928=PBC=PD(30.8=95.3),PF070286=DUF1319=PD(55.3=81.2),PF040917=Sec15=PD(64.2=81.2),PF0004624=Homeobox=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CACGCTTTAAACTGCCACAGG
R:
GTGCGTCCAGAAATCGGGAG
Band lengths:
260-505
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]