GgaEX1042240 @ galGal3
Exon Skipping
Gene
ENSGALG00000003429 | F1NQJ4_CHICK
Description
NA
Coordinates
chr8:5439846-5539114:-
Coord C1 exon
chr8:5539040-5539114
Coord A exon
chr8:5442412-5442656
Coord C2 exon
chr8:5439846-5440036
Length
245 bp
Sequences
Splice sites
3' ss Seq
TTCCCTTTGTGTCCCCACAGTGC
3' ss Score
12.2
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
GGAAACACGCTTTAAACTGCCACAGGATGAAGCCGGCTCTTTTTAATGTCTTGTGTGAAATCAAAGAGAAAACAG
Seq A exon
TGCTGAGCATCCGGGGAGCGCAGGAAGAGGAGCCCACGGACCCTCAGCTGATGCGGTTAGACAACATGCTGCTGGCCGAGGGCGTCGCTGGCCCTGAGAAAGGAGGGGGCTCTGCTGCTGCTGCCGCTGCCGCCGCCGCATCGGGAGGAGCCGGATCCGACAACTCGGTGGAGCACTCCGACTACAGAGCCAAGCTGTCCCAGATCCGGCAGATCTACCACACAGAGCTGGAGAAGTACGAGCAG
Seq C2 exon
GCGTGCAACGAATTCACCACCCACGTGATGAACCTGCTGCGTGAGCAGAGCCGGACCCGGCCCATCTCACCAAAGGAGATAGAGCGGATGGTGAGCATCATCCACCGCAAGTTCAGCTCCATCCAGATGCAGTTGAAGCAAAGCACGTGTGAAGCCGTCATGATCTTGCGCTCCCGATTTCTGGACGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003429-'0-6,'0-5,4-6=AN
Average complexity
A_S
Mappability confidence:
88%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.039 A=0.500 C2=0.219
Domain overlap (PFAM):
C1:
PF037928=PBC=PU(14.8=96.2),PF0044324=UCH=PU(1.7=15.4)
A:
PF037928=PBC=FE(47.9=100),PF040917=Sec15=PU(32.1=32.9),PF070286=DUF1319=PU(34.1=34.1),PF0044324=UCH=FE(34.5=100)
C2:
PF037928=PBC=PD(36.1=95.3),PF040917=Sec15=PD(65.5=85.9),PF070286=DUF1319=PD(63.4=81.2),PF0044324=UCH=FE(26.8=100),PF0004624=Homeobox=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CACGCTTTAAACTGCCACAGG
R:
GTGCGTCCAGAAATCGGGAG
Band lengths:
260-505
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]